Posts Tagged ‘genetic diversity’

The list of STMA-supported research publications from West Africa for the year 2019 is out

Posted on News, Press room, Published Journals, Research News, Seed System Publication, West Africa News, West Africa Publications, November 30, 2019

Melaku Gedil and Abebe Menkir. 2019. An Integrated Molecular and Conventional Breeding Scheme for Enhancing Genetic Gain in Maize in Africa. Published in Frontiers. Plant Sciences and accessible here

Adu, G. B., Badu-Apraku, B., Akromah, R., Garcia-Oliveira, A. L., Gedil, M., Awuku, F. J. 2019. Genetic diversity and population structure of early-maturing tropical maize inbred lines using SNP markers, published  in PloS ONE, volume 14, number 4 and accessible here  

Badu-Apraku, B., Talabi, A. O., Fakorede, M., Fasanmade, Y., Gedil, M., Magorokosho, C., Asiedu, R. 2019. Yield gains and associated changes in an early yellow bi-parental maize population following genomic selection for Striga resistance and drought tolerance, published in BMC Plant Biology, volume 19, number 129, and accessible here.

Bankole, F., Menkir, A., Olaoye , G.*, Olakojo, O.*, Gedil, M. 2019. Association studies between grain yield and agronomic traits of a MARS maize (Zea mays L.) population under drought and non-stress condition, published in Acta Agriculturae Slovenica, volume 114, and accessible here.

Kammo, E. Q., Suh, C., Mbong, G. A., Djomo, S. H., Chimi, N. L. L., Mbeungang, D. L., Mafouasson, H. A., Meseka, S. K. and Menkir, A. 2019. Biological versus chemical control of fall armyworm and Lepidoptera stem borers of maize (Zea mays), published in Agronomie Africaine, volume 31, number 2, and accessible here.

Kolawole, A. O., Menkir, A., Blay, E., Ofori, K. and Kling, J. G., 2019. Changes in heterosis of maize (Zea mays L.) varietal cross hybrids after four cycles of reciprocal recurrent selection, published in Cereal Research Communications, volume 47, number 1, and accessible here .

Sangare, A., Menkir, A., Ofori, K. and Gracen, V., 2019. Studies on estimation of heterosis for striga resistance in maize test crosses in Mali, published in Journal of Genetics, Genomics & Plant Breeding, volume 3, number 3, and accessible here

Akaogu, I. C., Badu-Apraku, B., Tongoona, P., Ceballos, H., Gracen, V. E., Offei, S. and Dzidzienyo, D. 2019. Inheritance of Striga hermonthica adaptive traits in an early-maturing white maize inbred line containing resistance genes from Zea diploperennis. published in Plant Breeding, and accessible here  

Annor, B., Badu-Apraku, B., Nyadanu, D., Akromah, R. and Fakorede, M. 2019. Testcross performance and combining ability of early maturing maize inbreds under multiple-stress environments, published in NATURE Scientific Reports, volume 9, and accessible here .

Nelimor, C., Badu-Apraku, B., Nguetta, S. P., Tetteh, A. Y. and Garcia-Oliveira, A. L. 2019. Phenotypic characterization of maize landraces from Sahel and Coastal west Africa reveals marked diversity and potential for genetic improvement, published in Journal of Crop Improvement, and accessible here .

Obeng-Bio, E., Badu-Apraku, B., Ifie, B. E., Danquah, A., Blay, E. and Annor, B. 2019. Genetic analysis of grain yield and agronomic traits of early provitamin A quality protein maize inbred lines in contrasting environments,  published in The Journal of Agricultural Science, and accessible here.

Nelimor, C., Badu-Apraku, B., Tetteh, A. Y.* and Nguetta, A. S. 2019. Assessment of genetic diversity for drought, heat and combined drought and heat stress tolerance in early maturing maize landraces, published in Plants, volume 8, and accessible here.

Badu-Apraku, B., Fakorede, M., Talabi, A. O., Oyekunle, M., Aderounmu, M., Lum, A. F., Ribeiro, P. F., Adu, G. B. and Toyinbo, J. O. 2019. Genetic studies of extra-early provitamin-A maize inbred lines and their hybrids in multiple environments, published in Crop Science, and accessible here.  

Badu-Apraku, B. and Akinwale, R. O. 2019. Biplot analysis of line X tester data of maize (Zea mays L.) inbred lines under stress and nonstress environments. Published in Cereal Research Communications, volume 47, number 3, and accessible here.

Oyinbo, O., Mbavai, J. J., Shitu, M. B., Kamara, A., Abdoulaye, T. and Ugbabe, O. O. 2019. Sustaining the beneficial effects of maize production in Nigeria: does adoption of short season maize varieties matter?  Published in Experimental Agriculture, and accessible here  

Kadjo, D., Ricker-Gilbert, J., Shively, G. and Abdoulaye, T. 2019. Food safety and adverse selection in rural maize markets. Published in Journal of Agricultural Economics, and accessible here .

Assfaw Wossen, T., Alene, A., Abdoulaye, T., Feleke, S. and Manyong, V. 2019. Agricultural technology adoption and household welfare: measurement and evidence, published in Food Policy, and accessible here  

Genetic diversity and population structure of early-maturing tropical maize inbred lines using SNP markers

Posted on , November 30, 2019

Information on genetic diversity and population structure are very important in any breeding programme for the improvement of traits of interest and the development of outstanding products for commercialization. In the present study, we assessed the genetic diversity of 94 early-maturing white and yellow tropical maize inbred lines using single nucleotide polymorphism (SNP) markers. The larger number of SNP markers used in this study allowed a clearer inference of the population structure of the 94 inbred lines. Cluster analysis resolved the inbred lines into different clusters based on their pedigree, selection history and endosperm colour. However, three heterotic groups were revealed by population structure analysis, but additional field evaluation could be more informative to confirm the heterotic groups identified. Nevertheless, wide genetic variability existed among the inbred lines making them unique with the potential to contribute new beneficial alleles to maize breeding programmes in the tropics, especially in the West and Central Africa (WCA) sub-region.

Molecular diversity and selective sweeps in maize inbred lines adapted to African highlands

Posted on , November 17, 2019

Little is known on maize germplasm adapted to the African highland agro-ecologies. In this study, we analyzed high-density genotyping by sequencing (GBS) data of 298 African highland adapted maize inbred lines to (i) assess the extent of genetic purity, genetic relatedness, and population structure, and (ii) identify genomic regions that have undergone selection (selective sweeps) in response to adaptation to highland environments.

Nearly 91% of the pairs of inbred lines differed by 30–36% of the scored alleles, but only 32% of the pairs of the inbred lines had relative kinship coefficient <0.050, which suggests the presence of substantial redundancy in allelic composition that may be due to repeated use of fewer genetic backgrounds (source germplasm) during line development.

Results from different genetic relatedness and population structure analyses revealed three different groups, which generally agrees with pedigree information and breeding history, but less so by heterotic groups and endosperm modification.

We identified 944 single nucleotide polymorphic (SNP) markers that fell within 22 selective sweeps that harbored 265 protein-coding candidate genes of which some of the candidate genes had known functions. Details of the candidate genes with known functions and differences in nucleotide diversity among groups predicted based on multivariate methods have been discussed.

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